An open source security policy should be set up no differently than any other security strategy and policy. Document...
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the environment, assess the risks, design and implement controls to mitigate the risks, and monitor and actively manage your environment.
You should take into consideration the issues I raised in this answer to another question. These may reveal some additional risks. A risk that is present for open source software, but possibly not found in commercial software, is a potential lack of support or patches to fix issues.
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